VISDB Viral Integration Site DataBase

VIS ID

TVIS30010128

Fusion event

HIV-IL2RA integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

p15.1

Reference genome

Start

End

6095462/6053499 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-3194-3p ; hsa-mir-629-3p ; hsa-mir-6808-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-6868-3p ; hsa-mir-642a-5p ; hsa-mir-7973 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3124-3p ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-6515-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-877-3p ; hsa-mir-5088-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-4302 ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-4439 ; hsa-mir-3136-5p ; hsa-mir-6857-3p ; hsa-mir-4513 ; hsa-mir-6855-3p

Nearest miRNA

hsa-mir-5699/Upstream/2062240; hsa-mir-107/Downstream/98697;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/75328, chr10-CpG: 89/Downstream/35530

Upstream sequence

ggatattCACTGTGGTGGTTCTAGCTAGTGTTCAAATGTTTTCTGGAACAAAGCTTGAAGCAAATAAGAACGAAAGGAAACATAACTATCAGTATCGGAG

Downstream sequence

TTGGTGCATGGGCCGGCTTTAACCAGTCATGTTTCCTAGTCTATAGCTTTGCTCATTTTCTTACCAAAGGAAATCAGGGCCTGTTGGAGACTGTCCTATT