Basic Information
VIS ID
TVIS30010132
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
GRCh37/hg19
Start
13295011/13253011 (Hg38)
End
13295011/13253011 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3155a/Upstream/527658; hsa-mir-107/Downstream/1130189;
Nearest TSS
ENST00000439456/Upstream/18677; ENST00000448272/Downstream/41976;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/91221, chr10-CpG: 84/Downstream/46366
Nearby gene
UCMA(No orient, 18683)
Upstream sequence
acctcaggtgatctgcctgcctcggcctcccaaagtgctgggattacaggcgagagccaccatgcctgacctcttctgcacttctaaaaatacatatatt
Downstream sequence
ttagaaacagattagggagaattatcatcttaacagtggtaagttttccaatcaatgagcatgaaatacctacccatttattttgatcttcttaatttct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate