Basic Information
VIS ID
TVIS30010133
Fusion event
HIV-NMT2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
GRCh37/hg19
Start
15164163/15122164 (Hg38)
End
15164163/15122164 (Hg38)
Orient
+
Location type
Intronic
Target gene
NMT2
miRNAs that regulate target gene
hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p
Nearest miRNA
hsa-mir-1265/Upstream/685503; hsa-mir-107/Downstream/2722943;
Nearest TSS
ENST00000439456/Upstream/2779; ENST00000433455/Downstream/19189;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/24312, chr10-CpG: 103/Downstream/45661
Upstream sequence
TATATCATAGTCATTTAAAAAATTAGTTTCTGCTATGAGGCAGACTTAGCTTGATAAATTTCAAATAGCCTTTCTCAATATCAGAATTTTTTTTCTTTTG
Downstream sequence
TTACTGGTTCAGTAACAATCAACAATATCAAGCAATTAGATGAATTAATGAAAGCCACAGGATATATGATATCTGTTAATAGAGAACATTCAGAAATGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate