Basic Information
VIS ID
TVIS30010134
Fusion event
HIV-DNAJC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.31
Reference genome
GRCh37/hg19
Start
22202598/21913669 (Hg38)
End
22202598/21913669 (Hg38)
Orient
-
Location type
Intronic
Target gene
DNAJC1
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-16-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-1265/Upstream/417028; hsa-mir-107/Downstream/2362016;
Nearest TSS
ENST00000439456/Upstream/52763; ENST00000564681/Downstream/89730;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/378188, chr10-CpG: 77/Downstream/89376
Upstream sequence
TCACCAACTACTTGCTATTTTCCAGGTTACAGAACATATAATCAATTTAAAAATACCCAAGAAGGGCATTTTGGAGGTTACAAAAATTTCCTGGGGTTAC
Downstream sequence
AAGCCGAACACAACCAACAAAGAAGATTGGTTTTTGTCAGATTCCAAGAGAATGTGTACTTTCTTCAAACCCACCAGGAGAGCAGAAACAGACTGGTAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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