Basic Information
VIS ID
TVIS30010136
Fusion event
HIV-ANKRD26 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
27334870/27045941 (Hg38)
End
27334870/27045941 (Hg38)
Orient
+
Location type
Intronic
Target gene
ANKRD26
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-4480 ; hsa-mir-4786-3p ; hsa-mir-802 ; hsa-mir-548at-5p ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n
Nearest miRNA
hsa-mir-1265/Upstream/2770160; hsa-mir-107/Downstream/1243317;
Nearest TSS
ENST00000439456/Upstream/31262; ENST00000477034/Downstream/352;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/184641, chr10-CpG: 51/Downstream/54205
Upstream sequence
AAACAATTCCAAATGAACAACCTCTTAGCAAAAAACTACATTAATAGAAGTTCTAAGGACAATTAGTTTATTATAAATCTTTAAAAGATAATGGATCAAG
Downstream sequence
CTTTCTGAGGCTTTGACATGCAAACAAAACTAAATTtcataagcatttccttctctactgggtcactcccaaaagcatgcaaataaactctaaaagcttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate