Basic Information
VIS ID
TVIS30010144
Fusion event
HIV-ADK integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
76070708/74310950 (Hg38)
End
76070708/74310950 (Hg38)
Orient
+
Location type
Intronic
Target gene
ADK
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-5571-5p ; hsa-mir-4674 ; hsa-mir-6878-3p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-6749-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-4437 ; hsa-mir-4757-5p ; hsa-mir-6744-3p ; hsa-mir-378g ; hsa-mir-4680-5p ; hsa-mir-532-3p ; hsa-mir-212-5p ; hsa-mir-6513-3p ; hsa-mir-1224-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-6813-3p ; hsa-mir-498 ; hsa-mir-592 ; hsa-mir-4279 ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-597-5p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-1914-5p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p
Nearest miRNA
hsa-mir-1265/Upstream/1589850; hsa-mir-107/Downstream/1241508;
Nearest TSS
ENST00000439456/Upstream/134264; ENST00000467840/Downstream/214414;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/133720, chr10-CpG: 35/Downstream/502487
Upstream sequence
TCTCCCTTAAGTGTCAAATTTCAATTCAGATGTTAAACTTTCCCTGCCTTTTTCATTCAGAATCACTTCTTTCTTTGCTCTTGTTTTTTATTCAGCTTTG
Downstream sequence
TTCTATATATGGTTCTTTAAAAATAATTGTATGGAAAATTGCTATGTTCTTTTATTATAAAATGAAGTTGATTTTTCATTACAAAACAGTTTATATGCTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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