Basic Information
VIS ID
TVIS30010148
Fusion event
HIV-R3HCC1L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
99958841/98199084 (Hg38)
End
99958841/98199084 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
R3HCC1L
miRNAs that regulate target gene
hsa-mir-152-3p
Nearest miRNA
hsa-mir-107/Upstream/323187; hsa-mir-1287/Downstream/196134;
Nearest TSS
ENST00000439456/Upstream/35797; ENST00000433374/Downstream/52939;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/63927, chr10-CpG: 69/Downstream/69024
Upstream sequence
atgcagtatattcaaaatagtatcatttcaacatataatcagtataaaaataatggacattttgcatttttttgtatgaagtctttgaaatccaaatgta
Downstream sequence
ttttatatgcacagcacatctcagtttagactaactacacttcaagtgcttgatagctacttgtgactaattggacagtatagtcctagatcattCTTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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