VISDB Viral Integration Site DataBase

VIS ID

TVIS30010153

Fusion event

HIV-CACUL1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q26.11

Reference genome

Start

End

120498921/118739409 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA10D ; FRA10A ; FRA10B

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-106b-3p ; hsa-mir-92a-3p ; hsa-mir-6757-3p ; hsa-mir-105-5p ; hsa-mir-7853-5p ; hsa-mir-218-5p ; hsa-mir-549a ; hsa-mir-29b-1-5p ; hsa-mir-6719-3p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-6730-3p ; hsa-mir-6824-3p ; hsa-mir-6764-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-3691-3p ; hsa-mir-646 ; hsa-mir-4282 ; hsa-mir-503-5p ; hsa-mir-424-5p ; hsa-mir-6838-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-195-5p ; hsa-mir-497-5p ; hsa-mir-6819-5p ; hsa-mir-6812-5p ; hsa-mir-6737-5p ; hsa-mir-3941 ; hsa-mir-4455 ; hsa-mir-6747-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-342-5p ; hsa-mir-7155-5p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-3653-5p ; hsa-mir-4781-3p ; hsa-mir-4796-5p

Nearest miRNA

hsa-mir-107/Upstream/1571635; hsa-mir-202/Downstream/638563;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/143100, chr10-CpG: 108/Downstream/15107

Upstream sequence

ttcaacatttgactaccaataattccagagaaaacagaacagagaaaatgtaaagggagagaaatattaacacattaatataaaaaaaagaactaaGAAA

Downstream sequence

TTTTCTCAAGGGGAAAAAACgaatggcacctgacttctccattttaatatgcgtgcttaaagttaatgaagcaatacttttaaaatgccaaggaaaagtt