Basic Information
VIS ID
TVIS30010154
Fusion event
HIV-EIF3A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q26.11
Reference genome
GRCh37/hg19
Start
120835474/119075962 (Hg38)
End
120835474/119075962 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
EIF3A
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-16-5p ; hsa-mir-92b-3p ; hsa-mir-18a-3p ; hsa-mir-484 ; hsa-let-7c-5p ; hsa-mir-488-3p
Nearest miRNA
hsa-mir-107/Upstream/1908188; hsa-mir-202/Downstream/302010;
Nearest TSS
ENST00000439456/Upstream/16072; ENST00000472379/Downstream/4842;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/33248, chr10-CpG: 99/Downstream/4118
Upstream sequence
ccaccacgcctggctaattttttttttttttttttttgtatttttagtagaggcggggtttcaccgtgttagccaggatggtctcaatctcctgacctcg
Downstream sequence
tgatctgcccacctcggcctcccaaagtgctggggatacaggcgtgagccaccgcacccagccAATACTTTTTCTTTTAAGAGCTATCTGATAATggccg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate