VISDB Viral Integration Site DataBase

VIS ID

TVIS30010166

Fusion event

HIV-EIF4G2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

p15.4

Reference genome

Start

End

10821147/10799600 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7d-5p ; hsa-let-7b-5p ; hsa-mir-1229-3p ; hsa-mir-151a-5p ; hsa-mir-421 ; hsa-mir-484 ; hsa-mir-424-5p ; hsa-mir-331-3p ; hsa-mir-186-5p ; hsa-mir-106a-5p ; hsa-mir-93-5p ; hsa-mir-92a-3p ; hsa-mir-25-3p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-3607-3p ; hsa-mir-5680 ; hsa-mir-6504-3p ; hsa-mir-106b-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4650-3p ; hsa-mir-520g-5p ; hsa-mir-885-5p ; hsa-mir-4742-5p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-28-3p ; hsa-mir-548al ; hsa-mir-4445-3p ; hsa-mir-4438 ; hsa-let-7e-5p ; hsa-let-7c-5p ; hsa-let-7a-5p ; hsa-mir-4458 ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-let-7f-5p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-3658 ; hsa-mir-3686 ; hsa-mir-3653-3p ; hsa-mir-4275 ; hsa-mir-6507-5p ; hsa-mir-101-3p ; hsa-mir-582-5p ; hsa-mir-194-5p ; hsa-mir-585-5p ; hsa-mir-4668-3p ; hsa-mir-3161 ; hsa-mir-599 ; hsa-mir-562 ; hsa-mir-411-5p ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-196a-3p

Nearest miRNA

hsa-mir-210/Upstream/291274; hsa-let-7a-2/Downstream/857051;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/48058, chr11-CpG: 147/Downstream/8214

Upstream sequence

TCTTTTCCAGTACATGAAACATTACCATATGCAGAAAACCATTCGTCTTACCTAGTCATTAAGATGTTCACAAATCCTTTATCTACATGAAGTTTGGGAG

Downstream sequence

AGATGTTATCTTTAATCCATTTATATATGGTTTGAGGGGATGGATCCAACTTTATTTGCTTCAACAGTTCCTTCTCCAATTTGAGGAGTGGGAATAAGAA