Basic Information
VIS ID
TVIS30010169
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
13563007/13541460 (Hg38)
End
13563007/13541460 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/1377693; hsa-let-7a-2/Downstream/2428073;
Nearest TSS
ENST00000527297/Upstream/45279; ENST00000532769/Downstream/127210;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/77717, chr11-CpG: 114/Downstream/126581
Nearby gene
PTH(No orient, 45285)
Upstream sequence
catggatgtgctttcatttgtttgcgtcatctatgatttcttttagcagtgttttgtagttttccttgtagagatcttttacctcattcattaagtatat
Downstream sequence
tcctaagtattttattttattttttgtagctgttgtaaaagggattgagctattgatttcattctcagcttggttgcttttggcatatagcagtgctact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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