Basic Information
VIS ID
TVIS30010173
Fusion event
HIV-LOC102723370 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
21845537/21823991 (Hg38)
End
21845537/21823991 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102723370
Nearest miRNA
hsa-mir-210/Upstream/2063908; hsa-let-7a-2/Downstream/1595114;
Nearest TSS
ENST00000527297/Upstream/540254; ENST00000530837/Downstream/289457;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1153692, chr11-CpG: 88/Downstream/368635
Nearby gene
NELL1(No orient, 248308)
Upstream sequence
gatgacattatcttatatttagaaatttcaaaggaaactagtaaaaaatagaataaatgagtttaacaaggttgcagaacaaaatattgatatacaaaaa
Downstream sequence
tcaattatctgtatatatattagcagtgaacaatctgcaatgattctgtgtacaatagcattaaaaataatataacacttaaaaatatatttaacaaagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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