Basic Information
VIS ID
TVIS30010181
Fusion event
HIV-EEF1G integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
62338613/62571141 (Hg38)
End
62338613/62571141 (Hg38)
Orient
+
Location type
Intronic
Target gene
EEF1G
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-129-2/Upstream/4070; hsa-let-7a-2/Downstream/218674;
Nearest TSS
ENST00000527297/Upstream/14906; ENST00000532626/Downstream/1602;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/23559, chr11-CpG: 39/Downstream/2615
Upstream sequence
TCGTCTTCAAGTAAGCATCCAGCAGCCCCAGAATTCGCCTCACTTCCTCCTTTGCATTCTCAGTGGCCTAGTGATTCAACATGATAAAACTCATCAGTGG
Downstream sequence
GTACCAATCCCTTTCCCTCACCTCCCCCATTAATAGAACTAAGAGGGCTATTTTCACCTAGAAGTCTGAGCTCACCCTCACTCTCTTTCAATGGAGGCAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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