VISDB Viral Integration Site DataBase

VIS ID

TVIS30010192

Fusion event

HIV-RBM4B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.2

Reference genome

Start

End

66441196/66673725 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-424-5p ; hsa-mir-7151-3p ; hsa-mir-6807-5p ; hsa-mir-5095 ; hsa-mir-6735-3p ; hsa-mir-214-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-6748-3p ; hsa-mir-3065-3p ; hsa-mir-6504-3p ; hsa-mir-449b-3p ; hsa-mir-6871-3p ; hsa-mir-941 ; hsa-mir-4438 ; hsa-mir-5096 ; hsa-mir-5089-5p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-4755-3p ; hsa-mir-1273f ; hsa-mir-4716-5p ; hsa-mir-4781-3p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-505-5p ; hsa-mir-769-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-498 ; hsa-mir-3124-5p ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-1247-3p ; hsa-mir-17-3p ; hsa-mir-25-5p ; hsa-mir-3160-3p ; hsa-mir-34b-3p ; hsa-mir-3614-5p ; hsa-mir-4459 ; hsa-mir-4487 ; hsa-mir-485-5p ; hsa-mir-5186 ; hsa-mir-558 ; hsa-mir-6087 ; hsa-mir-6499-3p ; hsa-mir-6500-3p ; hsa-mir-658 ; hsa-mir-6884-5p ; hsa-mir-4477a

Nearest miRNA

hsa-mir-10392/Upstream/1024472; hsa-let-7a-2/Downstream/260709;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/29609, chr11-CpG: 55/Downstream/3801

Upstream sequence

tttttgtatttttagtagagacagggtttcaccatgttgaccaggctagtcttgaactcctgaccttaggtgatccacccccgcctcggccttccagagt

Downstream sequence

gctgggattacaggagtgagccacctcacccggGCTCAAGTGGCCCTTTTAAGAGGCCACCTTCATTAGTAGACAACTGAAAATAACTTAAATTGAAACG