Basic Information
VIS ID
TVIS30010197
Fusion event
HIV-LOC100130987 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
67117408/67349937 (Hg38)
End
67117408/67349937 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA11H
Target gene
LOC100130987
Nearest miRNA
hsa-mir-10392/Upstream/304229; hsa-let-7a-2/Downstream/140308;
Nearest TSS
ENST00000527297/Upstream/32066; ENST00000613900/Downstream/3141;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/31595, chr11-CpG: 26/Downstream/3448
Upstream sequence
ctgaccagtctctctaacatagcgcccctggcatccttggaccctttctgatcccaactctgattttgcttactactgactgctacctgtcataattaac
Downstream sequence
ttacgtgtttgtttttgcccatctcctgaccattagtaataccccaaggggacctttgGTGCCTGGCACATAGTGAGTGCTTagcagctgggcaggaggt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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