Basic Information
VIS ID
TVIS30010200
Fusion event
HIV-PPFIA1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
70224309/70378203 (Hg38)
End
70224309/70378203 (Hg38)
Orient
+
Location type
Exonic
Fragile sites / regions
FRA11H ; FRA11A
Target gene
PPFIA1
miRNAs that regulate target gene
hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-142-3p
Nearest miRNA
hsa-mir-10392/Upstream/94133; hsa-let-7a-2/Downstream/494067;
Nearest TSS
ENST00000527297/Upstream/125; ENST00000482755/Downstream/20099;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/106812, chr11-CpG: 79/Downstream/19979
Upstream sequence
TGCTGGGTCAGCAGAGACTCTCCCTGCAAACTTCCGGGTGACTTCTTCTATGTCTTCCCCCTCTATGCAGCCAAAGAAGATGCAGATGGACGGTATGTGA
Downstream sequence
TGGGTCACACTAACCTGTCACTTGTTGGGAGCATGAGCAGCTTTCTGTCTGGAACATTAATAATGATCTAAAACGGCCTATTTAATATGTTACAAGGCAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate