VISDB Viral Integration Site DataBase

VIS ID

TVIS30010207

Fusion event

HIV-ANKRD42 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q14.1

Reference genome

Start

End

82917550/83206508 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-369-5p ; hsa-mir-6806-5p ; hsa-mir-3119 ; hsa-mir-885-3p ; hsa-mir-3184-5p ; hsa-mir-423-5p ; hsa-mir-6813-5p ; hsa-mir-6085 ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-6719-3p ; hsa-mir-1261 ; hsa-mir-4276 ; hsa-mir-5190 ; hsa-mir-4790-3p ; hsa-mir-5094 ; hsa-mir-380-3p ; hsa-mir-3133 ; hsa-mir-186-5p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-3683 ; hsa-mir-1273c ; hsa-mir-6811-3p ; hsa-mir-767-5p ; hsa-mir-873-3p ; hsa-mir-4793-3p ; hsa-mir-3130-3p ; hsa-mir-766-3p ; hsa-mir-1914-5p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-4696 ; hsa-mir-138-2-3p ; hsa-mir-6501-3p ; hsa-mir-451b ; hsa-mir-4432

Nearest miRNA

hsa-mir-10392/Upstream/1315672; hsa-let-7a-2/Downstream/3071825;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/11890, chr11-CpG: 68/Downstream/79091

Upstream sequence

TAACCAGATTATCTCTTTTATAGCTTGCtgctgtggtctgaatgtttgtgtcctccaaaataaatatgttgaaatcttaaccccaaggtgatggtgttaa

Downstream sequence

gaggtgaggccttttgggaggttattaggtcatgaggggtttgccctcataaatgggattaatgtccttttgcaagagacctcagagagctagctctcta