Basic Information
VIS ID
TVIS30010208
Fusion event
HIV-DLG2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
83277825/83566782 (Hg38)
End
83277825/83566782 (Hg38)
Orient
+
Location type
Intronic
Target gene
DLG2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-148b-3p
Nearest miRNA
hsa-mir-10392/Upstream/1675946; hsa-let-7a-2/Downstream/2711551;
Nearest TSS
ENST00000527297/Upstream/82569; ENST00000531424/Downstream/76820;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/280289, chr11-CpG: 24/Downstream/2061517
Upstream sequence
ATTAGATAAAAGCTAAGGGCAGAGGGCATGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATCCTCACAATGCTAGAAACATTCTTTC
Downstream sequence
ATTCAAAAACAATCTGTTAAATGCCTCACAGTAGCAGAACATCTCACAGTAGGTGTTTGCAATTTATTTTATGataaagcttatatgagagtaaataaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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