Basic Information
VIS ID
TVIS30010211
Fusion event
HIV-GRM5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
88587074/88853906 (Hg38)
End
88587074/88853906 (Hg38)
Orient
-
Location type
Intronic
Target gene
GRM5
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-510-3p ; hsa-mir-6815-3p ; hsa-mir-513b-5p ; hsa-mir-4719 ; hsa-mir-892b ; hsa-mir-582-3p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-548n
Nearest miRNA
hsa-mir-10392/Upstream/677313; hsa-let-7a-2/Downstream/1701868;
Nearest TSS
ENST00000527297/Upstream/342158; ENST00000526139/Downstream/193464;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/344512, chr11-CpG: 40/Downstream/211875
Upstream sequence
GTTTTAGGGATAAAATTCACAGAAGTTCTTTATATGCtactcttggtggaaatgtaaattagtacacccattaatagaaaacttcacggaagttcctcaa
Downstream sequence
caaaactaaaaacagaattatcatatgataatcacccctacccctggctacctttccagctaattttaactgcactctcatgttcatggcagcattattt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate