Basic Information
VIS ID
TVIS30010214
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
104244434/104373706 (Hg38)
End
104244434/104373706 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10392/Upstream/523726; hsa-let-7a-2/Downstream/6974051;
Nearest TSS
ENST00000527297/Upstream/209327; ENST00000527177/Downstream/235590;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/209376, chr11-CpG: 31/Downstream/1236693
Upstream sequence
gttttcagagatttcaccttggtaacttgaaattggccatagtgggaatatttacaccaaggagaccatcgaatgctacaaagcagggctttttgctttG
Downstream sequence
TTTTGTGTGTATAAATGTGGTTGCTCAAGATTTACtgtcttggttgggttgggctgggctgccataacagaataccatagactgagtgggcttaaaccac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate