Basic Information
VIS ID
TVIS30010216
Fusion event
HIV-LOC105369474 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
106244964/106374237 (Hg38)
End
106244964/106374237 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105369474
Nearest miRNA
hsa-mir-10392/Upstream/2524257; hsa-let-7a-2/Downstream/4973520;
Nearest TSS
ENST00000527297/Upstream/242121; ENST00000529675/Downstream/643914;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/296148, chr11-CpG: 137/Downstream/643360
Nearby gene
LOC101928535(No orient, 109332)
Upstream sequence
ttttcagtacacatatacagaaaagaaattcaagacagagaagagaatgagaagagagagaagagaacaaatatggctggtattttcgagcaataggcaa
Downstream sequence
gaagacagcatggatgctgtctaagtgaggaaaaataaagataaattactaagtgaggaaagataaagtcagagaagtaacaagTTTCTTTTGAttaatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate