VISDB Viral Integration Site DataBase

VIS ID

TVIS30010220

Fusion event

HIV-NKAPD1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q23.1

Reference genome

Start

End

111954877/112084153 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-196a-5p ; hsa-mir-98-5p ; hsa-let-7d-5p ; hsa-mir-615-3p ; hsa-mir-222-3p ; hsa-mir-92a-3p ; hsa-let-7a-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-135b-3p ; hsa-mir-329-5p ; hsa-mir-518a-5p ; hsa-mir-527 ; hsa-mir-508-3p ; hsa-mir-625-5p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-1275 ; hsa-mir-2052 ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-4450 ; hsa-mir-4464 ; hsa-mir-4525 ; hsa-mir-4665-5p ; hsa-mir-4671-3p ; hsa-mir-4723-5p ; hsa-mir-4748 ; hsa-mir-5010-5p ; hsa-mir-548aw ; hsa-mir-5698 ; hsa-mir-6870-5p ; hsa-mir-7111-5p ; hsa-mir-3613-3p ; hsa-mir-5692a ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-196b-5p ; hsa-mir-1303 ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-6509-5p ; hsa-mir-199a-3p ; hsa-mir-199b-3p ; hsa-mir-3129-5p ; hsa-mir-510-3p ; hsa-mir-4435 ; hsa-mir-6776-3p ; hsa-mir-497-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-154-5p ; hsa-mir-302f ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-216a-5p ; hsa-mir-216b-5p

Nearest miRNA

hsa-mir-10392/Upstream/570638; hsa-let-7a-2/Downstream/1365870;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/9426, chr11-CpG: 30/Downstream/2475

Upstream sequence

ACTGTGGGAAGAAAGATCAAGTGACGTATTATTTTTTCCTGGTTGTCACTTAATGGGCTGAGTAAAAAGCTTgaaaactcagactttcggtcttggttct

Downstream sequence

gccactcattggttatgaggaggcccagagcaggtaagttcaccttcctggccttactttcctgatgtgtaatacggAATTACTTCACAGTAGCATGACA