Basic Information
VIS ID
TVIS30010230
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
129135833/129265938 (Hg38)
End
129135833/129265938 (Hg38)
Orient
+
Location type
Intronic
Target gene
ARHGAP32 ; LOC399975
miRNAs that regulate target gene
hsa-mir-132-3p ; hsa-mir-423-5p ; hsa-mir-183-5p ; hsa-mir-93-5p ; hsa-mir-6082 ; hsa-mir-139-5p ; hsa-mir-4799-5p ; hsa-mir-6501-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-2278 ; hsa-mir-3119
Nearest miRNA
hsa-let-7a-2/Upstream/743489; hsa-mir-4697/Downstream/1400797;
Nearest TSS
ENST00000527297/Upstream/73740; ENST00000605151/Downstream/13386;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/374600, chr11-CpG: 194/Downstream/12664
Nearby gene
ARHGAP32(No orient, 73740)
Upstream sequence
TTTCACACATTTCACACAAACATTACTGTAGTAACTAAATATAATACTAATCTAAAGAAGAGAGCTATAAAAAATGAGTAACACATAAAATCCAGTTTCA
Downstream sequence
AGATGCTCCATCAATTGGTTGAATCTCATAAAAATAATTCTGTTTAGTAGGGATTAAACATAAAACTGAATATTTAGATTAAAAAATAACAATAAAAGGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate