Basic Information
VIS ID
TVIS30010235
Fusion event
HIV-OVOS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
9702229/9549633 (Hg38)
End
9702229/9549633 (Hg38)
Orient
+
Location type
Intronic
Target gene
OVOS
Nearest miRNA
hsa-mir-1244-3/Upstream/310082; hsa-let-7i/Downstream/2562319;
Nearest TSS
ENST00000382841/Upstream/182169; ENST00000487752/Downstream/58253;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/100970, chr12-CpG: 26/Downstream/20108
Nearby gene
KLRB1(No orient, 45641)
Upstream sequence
ataccactgagcttcagcctgggcaagagaatgagaacctgtctcaggaataaataaataaaaaTTTTTAAAAAGTGCattctctgctagagtcctcagg
Downstream sequence
atatcacataagtatagaattctctgacattttcatattcagaattattttttctaaagccttaataaatgaaagacaggtatttgtatattaaatcttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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