Basic Information
VIS ID
TVIS30010238
Fusion event
HIV-CLECL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
9880727/9728131 (Hg38)
End
9880727/9728131 (Hg38)
Orient
-
Location type
Intronic
Target gene
CLECL1
Nearest miRNA
hsa-mir-1244-3/Upstream/488580; hsa-let-7i/Downstream/2383821;
Nearest TSS
ENST00000382841/Upstream/5470; ENST00000537723/Downstream/4988;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/79875, chr12-CpG: 37/Downstream/383345
Upstream sequence
AGGTGTCACCTGGTTGATGTTTTGTATGTTTTGGTTTTGGTTAATGATTTGTTCCTTTGAGATTCTGCATATAAATGCTGCATATATGAGATAGAGTTAG
Downstream sequence
CCCAGAGTAGTTTTTTTCTGCAACGAAGAAAATATTTGTCTTTCTGCTGGCCATTTAACTGAAATTATCTTTGATAATTTATAGTCTCAGAACAATGTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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