Basic Information
VIS ID
TVIS30010241
Fusion event
HIV-PRH1-PRR4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
11200138/11047539 (Hg38)
End
11200138/11047539 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
PRH1-PRR4
Nearest miRNA
hsa-mir-1244-3/Upstream/1807988; hsa-let-7i/Downstream/1064413;
Nearest TSS
ENST00000382841/Upstream/349; ENST00000622602/Downstream/14755;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/323958, chr12-CpG: 63/Downstream/123633
Upstream sequence
GGAAAATTGGAAATTCAAGGGCTCAGAGGTGGCTAAGCAAAATAAATGGAAATACTTGACATCAGATGTCAATTTCAAAAAAAAAAAGGTTTTCTTTAAT
Downstream sequence
TCAAAAAGTGGAAGAAACAACTTTTCTAACTACACATTAAAAAATTATAACAGCACTGAAAGTATCATGATCATGTATCTTCATTCCTATTATAGAAATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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