Basic Information
VIS ID
TVIS30010247
Fusion event
HIV-LOC105369743 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q12
Reference genome
GRCh37/hg19
Start
45893587/45499804 (Hg38)
End
45893587/45499804 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369743
Nearest miRNA
hsa-mir-1244-3/Upstream/3175945; hsa-let-7i/Downstream/1688008;
Nearest TSS
ENST00000382841/Upstream/164255; ENST00000427628/Downstream/110786;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/282835, chr12-CpG: 72/Downstream/227139
Nearby gene
ANO6(No orient, 59400)
Upstream sequence
TTGCTGAAAATATGCCCTAGAGAGGGAAAAGTGAAGTAGAAAGTAGAGAATCATGttattaaaaatatatatattttaaaatGCACTCAGTCTTTAGAAA
Downstream sequence
TGATATAAAGCAAAAAGCTTTGACATCTCCTGTTAGGATAGTAGAGTCTTCTTAACAGGGAATTGTCAGCTCTGTTCTGTGGCGCTTTAGTTATGTTAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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