Basic Information
VIS ID
TVIS30010248
Fusion event
HIV-LOC100288798 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
46788124/46394341 (Hg38)
End
46788124/46394341 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC100288798
Nearest miRNA
hsa-mir-1244-3/Upstream/4070482; hsa-let-7i/Downstream/793471;
Nearest TSS
ENST00000382841/Upstream/5485; ENST00000607353/Downstream/143161;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/10268, chr12-CpG: 64/Downstream/436788
Upstream sequence
aatgtacaaaaacataaacattaaagaaaaagatggataaacttgactgtgttaaaattagaaatttctgatgttaaacaatacctaaagaagtgaaaag
Downstream sequence
tgagaaagagatttaaacatataaaaaattttatacacactgtgtataaagaacccctataaatcaatgaggaaaagacaacccaatagaaaaatgggta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate