VISDB Viral Integration Site DataBase

VIS ID

TVIS30010249

Fusion event

HIV-KMT2D integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.12

Reference genome

Start

End

49440449/49046666 (Hg38)

Orient

-

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-186-5p ; hsa-mir-9-5p ; hsa-mir-34a-5p ; hsa-mir-93-5p ; hsa-mir-1229-3p ; hsa-mir-1224-3p ; hsa-mir-760 ; hsa-mir-877-5p ; hsa-mir-744-5p ; hsa-mir-766-3p ; hsa-mir-615-3p ; hsa-mir-92b-3p ; hsa-mir-18a-3p ; hsa-mir-196b-5p ; hsa-mir-106b-5p ; hsa-mir-320a ; hsa-mir-125b-5p ; hsa-mir-15b-5p ; hsa-mir-222-3p ; hsa-mir-30c-5p ; hsa-mir-92a-3p ; hsa-mir-27a-3p ; hsa-mir-218-5p ; hsa-mir-30c-1-3p ; hsa-mir-4260 ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-1227-5p ; hsa-mir-3147 ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-1294 ; hsa-mir-92a-2-5p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-625-5p ; hsa-mir-486-3p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6134 ; hsa-mir-3616-3p ; hsa-mir-296-3p ; hsa-mir-7843-5p ; hsa-mir-6879-5p ; hsa-mir-6735-5p ; hsa-mir-4632-5p ; hsa-mir-4436b-3p ; hsa-mir-5197-3p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-449b-5p ; hsa-mir-6741-5p ; hsa-mir-6759-5p ; hsa-mir-6793-5p ; hsa-mir-6748-5p ; hsa-mir-675-5p ; hsa-mir-4466 ; hsa-mir-4749-5p ; hsa-mir-4706 ; hsa-mir-202-3p ; hsa-mir-1252-3p ; hsa-mir-3646 ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7a-5p ; hsa-let-7i-5p ; hsa-let-7b-5p ; hsa-let-7f-5p ; hsa-mir-98-5p ; hsa-let-7e-5p ; hsa-let-7g-5p ; hsa-mir-4446-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-3189-5p ; hsa-mir-4758-3p ; hsa-mir-5699-5p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-6832-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-6729-3p ; hsa-mir-346 ; hsa-mir-6516-5p ; hsa-mir-510-3p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-7156-3p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-3915 ; hsa-mir-6867-3p ; hsa-mir-6828-5p ; hsa-mir-4660 ; hsa-mir-3928-3p ; hsa-mir-494-3p ; hsa-mir-302a-5p ; hsa-mir-4685-3p ; hsa-mir-7113-3p ; hsa-mir-4287 ; hsa-mir-646 ; hsa-mir-1224-5p ; hsa-mir-4469 ; hsa-mir-1233-5p ; hsa-mir-1306-5p ; hsa-mir-134-5p ; hsa-mir-149-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-195-5p ; hsa-mir-3118 ; hsa-mir-3126-5p ; hsa-mir-3136-5p ; hsa-mir-3153 ; hsa-mir-3175 ; hsa-mir-424-5p ; hsa-mir-4300 ; hsa-mir-4419a ; hsa-mir-4439 ; hsa-mir-4510 ; hsa-mir-4513 ; hsa-mir-4723-5p ; hsa-mir-4728-5p ; hsa-mir-4796-3p ; hsa-mir-497-5p ; hsa-mir-5584-5p ; hsa-mir-5591-5p ; hsa-mir-5698 ; hsa-mir-597-3p ; hsa-mir-6090 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6511a-3p ; hsa-mir-6511b-3p ; hsa-mir-6512-3p ; hsa-mir-6720-5p ; hsa-mir-6726-5p ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-6778-5p ; hsa-mir-6784-3p ; hsa-mir-6785-5p ; hsa-mir-6825-5p ; hsa-mir-6827-5p ; hsa-mir-6834-5p ; hsa-mir-6838-5p ; hsa-mir-6849-3p ; hsa-mir-6855-3p ; hsa-mir-6857-3p ; hsa-mir-6862-3p ; hsa-mir-6870-5p ; hsa-mir-6875-5p ; hsa-mir-6883-5p ; hsa-mir-7111-5p ; hsa-mir-7854-3p ; hsa-mir-7855-5p ; hsa-mir-920 ; hsa-mir-92a-1-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/274629; hsa-let-7i/Downstream/1187476;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/20157, chr12-CpG: 115/Downstream/13188

Upstream sequence

CTCAAGGCCCCAGGGCTCCACTGAAGATCCCAGTCTCCTTACCACTTGCACTTCCAGCCGCCCTTGGGGACGGTGAGCAGTGGGGGGTCCAGGCAGTATG

Downstream sequence

TGTGGTAGCTAATATCACAGTCATCACAGAGCAGCAGGCGTGAGGGGTCGGAGGCCTGGCCACACACCTCACACACAATACACTCCACACAACGCCAGCC