Basic Information
VIS ID
TVIS30010257
Fusion event
HIV-DPY19L2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
64053454/63659674 (Hg38)
End
64053454/63659674 (Hg38)
Orient
+
Location type
Intronic
Target gene
DPY19L2
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-let-7i/Upstream/1055905; hsa-mir-10527/Downstream/163989;
Nearest TSS
ENST00000382841/Upstream/39452; ENST00000536219/Downstream/8861;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/508487, chr12-CpG: 97/Downstream/8382
Upstream sequence
attctaaagtgacagtaatcaagacagtgtggtattggcataattatagatcaagagaataatagagtccagaaacagattcacatataatgtggtcaat
Downstream sequence
caattttcaacgattgtaccgagacaattaattcaatgggggaaaagacagttaccacaatggagcattttttggcattccaaaaatgttttgtaactca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate