VISDB Viral Integration Site DataBase

VIS ID

TVIS30010260

Fusion event

HIV-CAND1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q15

Reference genome

Start

End

67708289/67314509 (Hg38)

Orient

+

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-1301-3p ; hsa-mir-1296-5p ; hsa-mir-425-5p ; hsa-mir-195-5p ; hsa-mir-186-5p ; hsa-mir-1185-1-3p ; hsa-mir-136-3p ; hsa-mir-539-3p ; hsa-mir-1185-2-3p ; hsa-mir-580-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-6770-5p ; hsa-mir-1253 ; hsa-mir-6759-3p ; hsa-mir-3910 ; hsa-mir-548an ; hsa-mir-1304-5p ; hsa-mir-7856-5p ; hsa-mir-4477b ; hsa-mir-7151-3p ; hsa-mir-6077 ; hsa-mir-5095 ; hsa-mir-3975 ; hsa-mir-548v ; hsa-mir-3670 ; hsa-mir-3663-3p ; hsa-mir-4302 ; hsa-mir-4719 ; hsa-mir-556-5p ; hsa-mir-4700-3p ; hsa-mir-590-3p ; hsa-mir-651-3p ; hsa-mir-1252-3p ; hsa-mir-29c-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-139-5p ; hsa-mir-203a-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-511-5p ; hsa-mir-4266 ; hsa-mir-6830-3p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-4307 ; hsa-mir-6888-5p ; hsa-mir-7844-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-30a-5p ; hsa-mir-6739-3p ; hsa-mir-374a-3p ; hsa-mir-4677-5p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-6878-3p ; hsa-mir-22-5p ; hsa-mir-2116-5p ; hsa-mir-6744-3p ; hsa-mir-4312 ; hsa-mir-4757-5p ; hsa-mir-212-5p ; hsa-mir-487a-3p ; hsa-mir-154-3p ; hsa-mir-1247-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-3612 ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p

Nearest miRNA

hsa-let-7i/Upstream/1063352; hsa-mir-1178/Downstream/1958648;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/44242, chr12-CpG: 181/Downstream/333877

Upstream sequence

AGTGCATTGATGTTGAAGTTGGTGCCATTTCAAAATGTGGCAGGTGATAATCTTTTACCATAATTTGCATAAAACTGTAATAGAAGTTTATTTTGAGATG

Downstream sequence

TTAGTATATTATGTACTATGCATTTCTGTGGTATAGATGTTGTGGATATATTTAAGTATTTGGTTACATGGTTTTACAATAAATTACAATACTGCAGGCT