VISDB Viral Integration Site DataBase

VIS ID

TVIS30010263

Fusion event

HIV-FRS2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q15

Reference genome

Start

End

69885641/69491861 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-548b-3p ; hsa-mir-186-5p ; hsa-mir-7-5p ; hsa-mir-101-3p ; hsa-mir-96-5p ; hsa-mir-93-5p ; hsa-mir-1303 ; hsa-mir-196a-5p ; hsa-mir-206 ; hsa-mir-1-3p ; hsa-mir-340-5p ; hsa-mir-5189-3p ; hsa-mir-3163 ; hsa-mir-561-3p ; hsa-mir-548e-5p ; hsa-mir-3591-5p ; hsa-mir-4796-5p ; hsa-mir-4653-3p ; hsa-mir-622 ; hsa-mir-4255 ; hsa-mir-5680 ; hsa-mir-3646 ; hsa-mir-3662 ; hsa-mir-142-3p ; hsa-mir-6071 ; hsa-mir-6828-3p ; hsa-mir-31-3p ; hsa-mir-5589-3p ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-376c-3p ; hsa-mir-6757-3p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-5579-3p ; hsa-mir-4780 ; hsa-mir-4275 ; hsa-mir-4661-5p ; hsa-mir-10a-3p ; hsa-mir-590-5p ; hsa-mir-21-5p ; hsa-mir-5187-3p ; hsa-mir-302a-5p ; hsa-mir-6870-3p ; hsa-mir-1285-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-583 ; hsa-mir-4311 ; hsa-mir-1276 ; hsa-mir-448 ; hsa-mir-483-3p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-17-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-9-3p ; hsa-mir-4422 ; hsa-mir-6835-3p ; hsa-mir-3942-3p ; hsa-mir-218-1-3p ; hsa-mir-106a-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-6884-3p ; hsa-mir-218-2-3p ; hsa-mir-1243 ; hsa-mir-3654 ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30a-5p ; hsa-mir-30b-5p ; hsa-mir-30c-5p ; hsa-mir-200b-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-6744-5p ; hsa-mir-6507-5p

Nearest miRNA

hsa-let-7i/Upstream/218643; hsa-mir-1178/Downstream/92861;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/21168, chr12-CpG: 58/Downstream/93424

Upstream sequence

tgctgggtttacaggtgtgagtgagccacagtgctgggGCTATGtttgacttttaaaataatgatttaatgaatattgtatacatattttgcccgtgcaa

Downstream sequence

gtactttaaaattagaagtagaatttctgtgtccgtggatatacaatagcatttttgataaatatttccaaattgttctTTGTGTATTCATTTCTAAAGA