VISDB Viral Integration Site DataBase

VIS ID

TVIS30010265

Fusion event

HIV-TBC1D15 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q21.1

Reference genome

Start

End

72279183/71885403 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-484 ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-369-3p ; hsa-mir-140-3p ; hsa-mir-3120-3p ; hsa-mir-338-5p ; hsa-mir-7703 ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-4696 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-130b-5p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-451b ; hsa-mir-508-5p ; hsa-mir-4432 ; hsa-mir-6501-3p ; hsa-mir-548s ; hsa-mir-4684-5p ; hsa-mir-3926 ; hsa-mir-4786-5p ; hsa-mir-3190-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-4698 ; hsa-mir-888-5p ; hsa-mir-6771-3p ; hsa-mir-1273e ; hsa-mir-1295b-5p ; hsa-mir-1912 ; hsa-mir-25-5p ; hsa-mir-423-3p ; hsa-mir-4329 ; hsa-mir-4524a-3p ; hsa-mir-4524b-3p ; hsa-mir-4768-3p ; hsa-mir-658 ; hsa-mir-6746-5p ; hsa-mir-6771-5p

Nearest miRNA

hsa-let-7i/Upstream/2300580; hsa-mir-1178/Downstream/7533854;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/45548, chr12-CpG: 160/Downstream/386500

Nearest cancer related gene

TBC1D15(OG, No orient, 0)

Upstream sequence

ATGGCCTATGTGTTTACCTAATTTACCCTTTATTATGTATTTTCTATTAAATATACAGTTTTACTTGTGATGTTGCAGCTTTAAGTCAGGCAAGTCCTAA

Downstream sequence

GTCCTTTATAAAATTATTTCTCAGTTGGAAGACAGGGCCTTACCACTTTCCAAAAATCTTGTCTCTCATTTAGTTACTGTGTGCATCTGTACACACACAT