Basic Information
VIS ID
TVIS30010266
Fusion event
HIV-LOC100130268 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
75639568/75245788 (Hg38)
End
75639568/75245788 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC100130268
Nearest miRNA
hsa-let-7i/Upstream/5660965; hsa-mir-1178/Downstream/4173469;
Nearest TSS
ENST00000382841/Upstream/10748; ENST00000534648/Downstream/49268;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/36224, chr12-CpG: 20/Downstream/59742
Nearby gene
CAPS2(No orient, 30191)
Upstream sequence
TGAATTTATTAAGGGATGAAAGGCTGACTTTTTGGATAAATTTAAATTGTTCCTTTAAGAAAAGGGCAGCAACAAACATTCACTTCAGCCTCGGCATGTA
Downstream sequence
TCTGGAATTTTGTTTTTGCAAAAATCTCAGCTGCATTTGGCAAAATTTCATGTTCTTTAAATAAGAAGATTAGTTAAAACAAAACAAAACAAAAAAGAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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