Basic Information
VIS ID
TVIS30010271
Fusion event
HIV-EEA1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q22
Reference genome
GRCh37/hg19
Start
93191991/92798215 (Hg38)
End
93191991/92798215 (Hg38)
Orient
-
Location type
Intronic
Target gene
EEA1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-375 ; hsa-mir-124-3p ; hsa-mir-192-5p ; hsa-mir-106b-5p ; hsa-mir-20a-5p ; hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-5682 ; hsa-mir-585-5p ; hsa-mir-3152-3p ; hsa-mir-6867-5p ; hsa-mir-3650 ; hsa-mir-509-3p ; hsa-mir-101-3p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-20b-5p
Nearest miRNA
hsa-let-7i/Upstream/6053066; hsa-mir-1178/Downstream/1763574;
Nearest TSS
ENST00000382841/Upstream/61726; ENST00000549914/Downstream/22884;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/651658, chr12-CpG: 133/Downstream/130351
Upstream sequence
AATAATAAATTAGAATAGATTTGGAAATGGAAACCATTACAGTGTAACttaaaatattaataattaaaaCTATATGAAGCTTTACACTAGTGAATGTTTT
Downstream sequence
TAAGATATCCCACTTTGTAATTTTTATTCTTAGCCCTTAATAAGAATGATTTATTTTAAATTCCTTTAAATTTTTCTAATACACGATGAATGTTGCATAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate