Basic Information
VIS ID
TVIS30010273
Fusion event
HIV-CEP83 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q22
Reference genome
GRCh37/hg19
Start
94839636/94445860 (Hg38)
End
94839636/94445860 (Hg38)
Orient
-
Location type
Intronic
Target gene
CEP83
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-124-3p ; hsa-mir-26b-5p
Nearest miRNA
hsa-let-7i/Upstream/7700711; hsa-mir-1178/Downstream/115929;
Nearest TSS
ENST00000382841/Upstream/33265; ENST00000623122/Downstream/13818;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/258762, chr12-CpG: 79/Downstream/13700
Upstream sequence
taaagatgtgcacattagattcactgggagattgaaattgtcccagtaggaatgagtatgggtgtgtatttaagtgcaccacgcaatggaatgtcatcct
Downstream sequence
gtccagggttggttctgtgccaggataggctctagccaccagaaagcctgaaccctagagcaggctggaaaatgaatgaatgaatgaatacaaattattg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate