Basic Information
VIS ID
TVIS30010276
Fusion event
HIV-IFT81 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.11
Reference genome
GRCh37/hg19
Start
110605036/110167231 (Hg38)
End
110605036/110167231 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
IFT81
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-let-7i/Upstream/333795; hsa-mir-1178/Downstream/1136911;
Nearest TSS
ENST00000382841/Upstream/30424; ENST00000551055/Downstream/4664;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/42336, chr12-CpG: 183/Downstream/113356
Upstream sequence
TTGCAGATGCTACAGATATTTTTTTCTTTACTAGGCCTTTTTATTGGTATTTCATTGGTTTTCCTTATTAGTAAAAGACGAAGTTTCTGGAAGTACTTCC
Downstream sequence
CCCCCATTGTACTTTATCATTTTAACATTTTATTTTCATAAAGTAAGGCAGTACACAGGAATAAGCACAGGCATGTATTTTTCTCTTATCTGCCAGAGTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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