VISDB Viral Integration Site DataBase

VIS ID

TVIS30010279

Fusion event

HIV-SPPL3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.31

Reference genome

Start

End

121220908/120783105 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-568 ; hsa-mir-21-5p ; hsa-mir-653-3p ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-6886-3p ; hsa-mir-5189-3p ; hsa-mir-938 ; hsa-mir-6780b-3p ; hsa-mir-6890-3p ; hsa-mir-6809-5p ; hsa-mir-3613-3p ; hsa-mir-605-5p ; hsa-mir-4455 ; hsa-mir-6083 ; hsa-mir-1277-5p ; hsa-mir-3924 ; hsa-mir-511-3p ; hsa-mir-6867-5p ; hsa-mir-5007-3p ; hsa-mir-664a-3p ; hsa-mir-3163 ; hsa-mir-1537-3p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-3591-5p ; hsa-mir-335-3p ; hsa-mir-4639-5p ; hsa-mir-4775 ; hsa-mir-4735-5p ; hsa-mir-5196-3p ; hsa-mir-4793-5p ; hsa-mir-501-5p ; hsa-mir-4255 ; hsa-mir-590-3p ; hsa-mir-142-3p ; hsa-mir-1303 ; hsa-mir-5096 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-516a-5p ; hsa-mir-197-3p ; hsa-mir-193b-5p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-3663-5p ; hsa-mir-150-5p ; hsa-mir-4716-5p ; hsa-mir-4781-3p ; hsa-mir-483-5p ; hsa-mir-4762-3p ; hsa-mir-4303 ; hsa-mir-1911-5p ; hsa-mir-4682 ; hsa-mir-624-5p ; hsa-mir-6768-5p

Nearest miRNA

hsa-let-7i/Upstream/59839; hsa-mir-3612/Downstream/661168;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/43567, chr12-CpG: 125/Downstream/120506

Upstream sequence

GTGATAATATTAACCTCTGGAAAAGCTAATAAGTATGGAGGAAATTCTATTCTTATGAGGAAAACAAAATGAAGAAATGCCAACAATTCAACTCATTTAC

Downstream sequence

CAAAGATGGTATCACTCTATTTAGAAGATTGTAAATCTTTTGGTTATCACTAATTCCTGCGAGCATCAGCTGCCACCAATGACTGGTTTCCTAAGTGCGT