Basic Information
VIS ID
TVIS30010285
Fusion event
HIV-CCDC92 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.31
Reference genome
GRCh37/hg19
Start
124448113/123963566 (Hg38)
End
124448113/123963566 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
CCDC92
miRNAs that regulate target gene
hsa-mir-148b-3p
Nearest miRNA
hsa-let-7i/Upstream/427032; hsa-mir-3612/Downstream/373615;
Nearest TSS
ENST00000382841/Upstream/16793; ENST00000542820/Downstream/8279;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/25950, chr12-CpG: 206/Downstream/8460
Upstream sequence
GTGCAGAAAGGGACTACTTAACCTGTTTAGCTAAAATGACTGGAACACTGGATCAGCATTTCCTTGCTTTCTTTTGCTTGGAAGAAAAAGGATTGCAAAT
Downstream sequence
AAACTCCAAATTGCCTAAGAATGTAGTAATTTTCTTCCTGTTTCTTGATAATGTGAGATTTTGCTTTTCTTCTATGAACGCTAAAGTGACCTGAGAAGTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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