Basic Information
VIS ID
TVIS30010286
Fusion event
HIV-TMEM132D integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.33
Reference genome
GRCh37/hg19
Start
130356389/129871844 (Hg38)
End
130356389/129871844 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
TMEM132D
Nearest miRNA
hsa-let-7i/Upstream/1577666; hsa-mir-6763/Downstream/2710153;
Nearest TSS
ENST00000382841/Upstream/16900; ENST00000536512/Downstream/31822;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/12805, chr12-CpG: 122/Downstream/31220
Upstream sequence
CCAATTTTTATTAAACATGTACCAGCACACCATGGGCTCCAGATCTAGGGTCAAAAACCTATCTTCAGAGGCTATATGGGAAGTTCCAAGCCAGTCTCTG
Downstream sequence
AACCCCACTAAAAATCCCCCATGGCCCTTCCGGCCTGGATGTGATCTTTCCATAGGCAGCCTCCATAGGCCAGGCCTACAGGAACGGAAGAGGAAAGGGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate