VISDB Viral Integration Site DataBase

VIS ID

TVIS30010290

Fusion event

HIV-SPATA13 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr13

Cytoband

q12.12

Reference genome

Start

End

24750008/24175869 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-27a-3p ; hsa-let-7e-5p ; hsa-mir-376a-5p ; hsa-mir-382-3p ; hsa-mir-548c-3p ; hsa-mir-4310 ; hsa-mir-7157-5p ; hsa-mir-7-1-3p ; hsa-mir-7-2-3p ; hsa-mir-513a-5p ; hsa-mir-3065-5p ; hsa-mir-3529-3p ; hsa-mir-27b-3p ; hsa-mir-5100 ; hsa-mir-139-5p ; hsa-mir-1283 ; hsa-mir-194-3p ; hsa-mir-1288-5p ; hsa-mir-8063 ; hsa-mir-3941 ; hsa-mir-4643 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-1252-5p ; hsa-mir-494-3p ; hsa-mir-651-3p ; hsa-mir-3064-3p ; hsa-mir-6861-3p ; hsa-mir-6821-3p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-140-3p ; hsa-mir-6800-3p ; hsa-mir-4700-3p ; hsa-mir-510-3p ; hsa-mir-203a-3p ; hsa-mir-4261 ; hsa-mir-4496 ; hsa-mir-6079 ; hsa-mir-6828-5p ; hsa-mir-671-5p

Nearest miRNA

hsa-mir-2276/Upstream/13365; hsa-mir-1267/Downstream/15488165;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/14470, chr13-CpG: 67/Downstream/132091

Upstream sequence

aaataaactagagagacacggATCTAGGTGTCATTTTTCTTCTCCCACAGGAGAGAAACTTTAGAAATCCCAGTGGCTTCTATGCAGAGCGATTACTAGA

Downstream sequence

AAACATAAATAAATTTCTCCTTGAAGATTATTTTAGTTGCAAATAATGCAGCTTAAATTTGAAAAGCGATAGTTAAAATACTCTGCAGGAAAACTACTGC