Basic Information
VIS ID
TVIS30010295
Fusion event
HIV-TPTE2P5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.11
Reference genome
GRCh37/hg19
Start
41482638/40908502 (Hg38)
End
41482638/40908502 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
TPTE2P5
Nearest miRNA
hsa-mir-2276/Upstream/97641; hsa-mir-1267/Downstream/192517;
Nearest TSS
ENST00000623511/Upstream/115344; ENST00000379487/Downstream/73723;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/118319, chr13-CpG: 43/Downstream/13138
Upstream sequence
TTGTTCATCCTGAAACATTTTGatttttttaaattaattttaaCTATAGTCAACCTTACTAATTTCACAGATATAAATAATGCAAATTTCCCTCAACCCC
Downstream sequence
TTTGCCCTTAGAGAAGCTTCCTCATACACACAACAAAGTCAGAACTAAATCAGACTCCCAATATGCCATTAGTTAGGTTGGGGAGGAGGCTTGGTAACTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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