Basic Information
VIS ID
TVIS30010297
Fusion event
HIV-ZC3H13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.13
Reference genome
GRCh37/hg19
Start
46597487/46023352 (Hg38)
End
46597487/46023352 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZC3H13
miRNAs that regulate target gene
hsa-mir-218-5p ; hsa-mir-374b-3p ; hsa-mir-6794-3p ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-520f-5p ; hsa-mir-4509 ; hsa-mir-4744 ; hsa-mir-4639-3p ; hsa-mir-4698
Nearest miRNA
hsa-mir-2276/Upstream/1827152; hsa-mir-1267/Downstream/3973063;
Nearest TSS
ENST00000623511/Upstream/2865; ENST00000606351/Downstream/29333;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/309273, chr13-CpG: 51/Downstream/28967
Upstream sequence
aaaaatcttagctctgtgctgttgcaccctttcttcccatttccagacagttctaattattagaaaattatttcttatgcccattgcatctttcttaacc
Downstream sequence
tctctagaggttctacctccctacaatttctactgattgggaatagttctaacctctggaattatgcaaaacaaatctaatacttctttcacgtgctagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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