VISDB Viral Integration Site DataBase

VIS ID

TVIS30010298

Fusion event

HIV-SUGT1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr13

Cytoband

q14.3

Reference genome

Start

End

53241634/52667499 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-34a-5p ; hsa-mir-583 ; hsa-mir-6835-3p ; hsa-mir-4253 ; hsa-mir-3945 ; hsa-mir-6862-5p ; hsa-mir-6734-5p ; hsa-mir-1226-5p ; hsa-mir-6834-5p ; hsa-mir-7106-5p ; hsa-mir-765 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-219a-1-3p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-4784 ; hsa-mir-4461 ; hsa-mir-3150b-3p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-5100 ; hsa-mir-570-3p ; hsa-mir-139-5p ; hsa-mir-1288-5p ; hsa-mir-552-3p ; hsa-mir-499a-5p ; hsa-mir-208b-3p ; hsa-mir-208a-3p ; hsa-mir-508-5p ; hsa-mir-8087 ; hsa-mir-4432 ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-4509 ; hsa-mir-4744 ; hsa-mir-4422 ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-513b-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-3621 ; hsa-mir-4767 ; hsa-mir-6087 ; hsa-mir-6089 ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-4799-5p ; hsa-mir-6778-3p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-150-5p ; hsa-mir-1281 ; hsa-mir-4485-5p ; hsa-mir-1224-3p ; hsa-mir-186-3p ; hsa-mir-125a-3p ; hsa-mir-1306-5p ; hsa-mir-8485 ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-4279 ; hsa-mir-627-3p ; hsa-mir-3158-5p ; hsa-mir-4793-3p ; hsa-mir-3130-3p ; hsa-mir-6845-3p ; hsa-mir-4668-3p ; hsa-mir-298 ; hsa-mir-5589-3p ; hsa-mir-7977 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-4284 ; hsa-mir-383-3p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-24-3p ; hsa-mir-3622b-5p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4530 ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-4690-5p ; hsa-mir-634 ; hsa-mir-148a-5p ; hsa-mir-371a-5p ; hsa-mir-371b-5p ; hsa-mir-372-5p ; hsa-mir-373-5p ; hsa-mir-3973 ; hsa-mir-513c-5p ; hsa-mir-514b-5p ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-548ac ; hsa-mir-548ae-3p ; hsa-mir-548ah-3p ; hsa-mir-548aj-3p ; hsa-mir-548am-3p ; hsa-mir-548aq-3p ; hsa-mir-548bb-3p ; hsa-mir-548d-3p ; hsa-mir-548h-3p ; hsa-mir-548j-3p ; hsa-mir-548x-3p ; hsa-mir-548z ; hsa-mir-5582-3p ; hsa-mir-616-5p ; hsa-mir-6758-3p

Nearest miRNA

hsa-mir-15a/Upstream/1114832; hsa-mir-1267/Downstream/142551;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/14570, chr13-CpG: 96/Downstream/71359

Upstream sequence

agtggcgtgatctcggctcactgcaacctctgcctcctggatccaagtgattctcctgcttcagcctcccaagtagctgggactacaggcatgcaccacc

Downstream sequence

acgccctgcttaatttttgtatttttagtagagatggggtttcaccatattggccaggcaggtctccaactcctgacttTTTTTTTTAAACTGAATTTTA