Basic Information
VIS ID
TVIS30010299
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
53874816/53300681 (Hg38)
End
53874816/53300681 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-15a/Upstream/490541; hsa-mir-1267/Downstream/1011291;
Nearest TSS
ENST00000623511/Upstream/107014; ENST00000615176/Downstream/44530;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/98471, chr13-CpG: 25/Downstream/3840156
Nearby gene
LINC01065(No orient, 148781)
Upstream sequence
gggcATACTTTATATTTTTGAATGCACAGGAATATCTTATTAAAAAACTACTCAAAATGAAGTCAGTGGGTAAATACCACACACCAAACATGATGCCATA
Downstream sequence
TTACATATTCAGGAATGTGTGTGTTTAACTATTTAGGATATTAAAAAGTTGTAGTACCTAGTCACATACCTTCAAGAGTTGATCCATGTGAGGATAAACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate