Basic Information
VIS ID
TVIS30010301
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
57883307/57309173 (Hg38)
End
57883307/57309173 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/2134625; hsa-mir-1267/Downstream/3890625;
Nearest TSS
ENST00000623511/Upstream/141976; ENST00000615375/Downstream/322637;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/141724, chr13-CpG: 58/Downstream/320279
Nearby gene
PRR20E(No orient, 138955)
Upstream sequence
ctttccccacttctttctcctttttcttcttctctctccttttctctttttctGTTCTCCTCACTCTCTGTCTCTCCCTCTCATTTAATCTCTCTATCCC
Downstream sequence
CTAACCCCCAATCAGAGTTGTTTCCAAATCCCTTAGCTGTCTTTGTTGTTTAGCAATATCAAAAGTGTGGAGCATGGGACAAATCTAGATTCCCTTTGTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate