Basic Information
VIS ID
TVIS30010306
Fusion event
HIV-ARGLU1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
107212422/106560074 (Hg38)
End
107212422/106560074 (Hg38)
Orient
+
Location type
Intronic
Target gene
ARGLU1
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-32-5p ; hsa-mir-877-3p ; hsa-mir-744-3p ; hsa-mir-432-3p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-7156-3p ; hsa-mir-4795-3p ; hsa-mir-4684-3p ; hsa-mir-1193 ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-126-5p ; hsa-mir-656-3p ; hsa-mir-4463 ; hsa-mir-1243 ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-103b ; hsa-mir-1273h-3p ; hsa-mir-219b-3p ; hsa-mir-3651 ; hsa-mir-3678-3p ; hsa-mir-3943 ; hsa-mir-4323 ; hsa-mir-4668-5p ; hsa-mir-4773 ; hsa-mir-5687 ; hsa-mir-6501-3p ; hsa-mir-6769a-3p
Nearest miRNA
hsa-mir-1297/Upstream/4514070; hsa-mir-1267/Downstream/971097;
Nearest TSS
ENST00000623511/Upstream/2379; ENST00000607593/Downstream/1877;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/23398, chr13-CpG: 88/Downstream/7570
Upstream sequence
TTATAATCAGAGGACAAGTTGTTAAAACATATGGATTTGCTCATTTGCCAATCACTTCGTCTGGGGCTGAGCTACAGAGAAGGAGAAATTATGTAGCAGG
Downstream sequence
CAACTCAGATTGGCTGAATTGATTTCCCGCTAAGCAAAGAGAGAATAAATACAGATTGAAGAGATTCAGATTGCTGGACTAATAGTGCGTAGTTTTTACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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