Basic Information
VIS ID
TVIS30010307
Fusion event
HIV-ABHD13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
108884665/108232317 (Hg38)
End
108884665/108232317 (Hg38)
Orient
+
Location type
UTR3
Target gene
ABHD13
miRNAs that regulate target gene
hsa-mir-3653-3p ; hsa-mir-190a-3p ; hsa-mir-3658 ; hsa-mir-4477a ; hsa-mir-5011-5p ; hsa-mir-6507-5p ; hsa-mir-1277-5p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-4639-5p ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-5580-3p ; hsa-mir-603 ; hsa-mir-8485
Nearest miRNA
hsa-mir-1267/Upstream/701069; hsa-mir-4502/Downstream/2108641;
Nearest TSS
ENST00000623511/Upstream/13938; ENST00000486502/Downstream/18923;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/13337, chr13-CpG: 137/Downstream/263133
Upstream sequence
ATTTTGCTTTTATGCTGCTTTTTCTTTTTGATACTCCAGGTTTATAAACTATCTTTTAAAATTTTAAGCCAGGACTTCAAAAATTGTAGAGTACTTGTTT
Downstream sequence
GGCGTTCCCTACCTTCATTCTCTTAGGGTTAAGGAGCCTTTCTTTCTGCAGCTAAGGGCAGAGGCTGTGCCTAGGGCTATACCACCACTAGCATCTGTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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