Basic Information
VIS ID
TVIS30010311
Fusion event
HIV-CCNB1IP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
20790423/20322264 (Hg38)
End
20790423/20322264 (Hg38)
Orient
-
Location type
Intronic
Target gene
CCNB1IP1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-3663-3p ; hsa-mir-3607-3p ; hsa-mir-3613-3p ; hsa-mir-6510-3p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-187-3p ; hsa-mir-6871-5p ; hsa-mir-411-5p ; hsa-mir-5003-3p ; hsa-mir-1225-3p ; hsa-mir-1253 ; hsa-mir-1470 ; hsa-mir-3150b-3p ; hsa-mir-3200-5p ; hsa-mir-4689 ; hsa-mir-4691-3p ; hsa-mir-4749-3p ; hsa-mir-4784 ; hsa-mir-6769a-3p ; hsa-mir-6770-5p ; hsa-mir-6858-5p ; hsa-mir-6887-3p ; hsa-mir-3189-5p
Nearest miRNA
hsa-mir-1185-1/Downstream/701050;
Nearest TSS
ENST00000550708/Upstream/5856; ENST00000528465/Downstream/7006;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/634012, chr14-CpG: 22/Downstream/91146
Upstream sequence
ATAGGCACtgattccaggttttacaattaaaaacaataccacagtgaatgttctatacatgtctccttgagtacatatgccaagaattccttttggAAAC
Downstream sequence
CGCCCTGGTTTGTCAATCAGGGCTTCCCCCACCTTCCCCACCACCCCACCCTGAACCCTCTATGGCTCCCACACCCAGAGACTAGGTTAGTATATAagca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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