Basic Information
VIS ID
TVIS30010314
Fusion event
HIV-chr14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
21742899/21274740 (Hg38)
End
21742899/21274740 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-6717/Upstream/251354; hsa-mir-1185-1/Downstream/1682210;
Nearest TSS
ENST00000550708/Upstream/5246; ENST00000554750/Downstream/13199;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/4805, chr14-CpG: 28/Downstream/26244
Nearby gene
HNRNPC(No orient, 5261)
Upstream sequence
accgtgtctcaaaaagagaaaaaaaaaagaTTCTAATGCTAGGAGGTCTAGTTCTAGAGGATATGCAAATAACCATTACACTATTATTAATAATGTAATG
Downstream sequence
TATGCCAAGGTGGGAAAATCCTACCcattcactcaacaatacttgttaaacgtactatgtaattagctgatgccacaagagcatagaagtaaacaaaaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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